SMTL ID : 5bzk.1

Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134

1 x 4WP: methyl 3-(3,4-dihydroisoquinolin-2(1H)-yl)propanoate(Non-covalent)

4WP.2: 10 residues within 4Å: Chain A: N.7, V.8, T.9, H.17, T.58, C.59, R.60, V.131, N.132, R.133 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.7, A:R.60, A:R.133 Hydrogen bonds: A:C.59 Salt bridges: A:H.17, A:E.19 pi-Cation interactions: A:R.133

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.24, C.59, I.70, I.78, C.79, A.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.24, A:A.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L.K. et al., Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule. To Be Published

Release Date

2016-06-29

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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