SMTL ID : 5c4l.2 (1 other biounit)

Conformational alternate of sisomicin in complex with APH(2")-IVa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x SIS: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside(Non-covalent)

SIS.1: 8 residues within 4Å: Chain A: N.52, D.221, E.255, E.258, E.259, K.287, E.288, W.291 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.258, A:W.291, A:W.291 Hydrogen bonds: A:D.221, A:E.255, A:E.259, A:E.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaplan, E. et al., Aminoglycoside binding and catalysis specificity of aminoglycoside 2-phosphotransferase IVa: A thermodynamic, structural and kinetic study. Biochim.Biophys.Acta (2016)

Release Date

2016-02-03

Peptides

APH(2'')-Id: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

APH(2'')-Id

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