SMTL ID : 5c9z.1

Crystal structure of PRMT5:MEP50 with EPZ015866 and sinefungin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-oligomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 21 residues within 4Å: Chain A: L.323, L.327, Y.332, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 4Z2.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.332, A:Y.332, A:G.373, A:G.375, A:K.401, A:D.427, A:M.428, A:R.429, A:E.443 Water bridges: A:E.336, A:N.402, A:L.445 Salt bridges: A:K.341 pi-Cation interactions: A:K.401

1 x 4Z2: 2-(cyclobutylamino)-N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]pyridine-4-carboxamide(Non-covalent)

4Z2.2: 18 residues within 4Å: Chain A: F.308, Y.312, Q.317, L.327, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SFG.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.327, A:V.334, A:F.335, A:F.335, A:F.335, A:F.335, A:V.511, A:F.585, A:F.588, A:F.588 Hydrogen bonds: A:E.452, A:F.585, A:F.588 Water bridges: A:N.451 Salt bridges: A:E.443, A:E.452 pi-Stacking: A:F.335 pi-Cation interactions: A:F.335

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: F.48, T.88, W.160, Q.271 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boriack-Sjodin, P.A., Crystal structure of PRMT5/MEP50 complex with sinefungin and 15866. To Be Published

Release Date

2016-06-29

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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