SMTL ID : 5ca8.1

Structures of the yeast dynamin-like GTPase Sey1p in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: S.72, D.84, D.123, E.125 Ligands: GDP.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.72, A:E.125, H2O.2

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: S.68, T.69, G.70, K.71, S.72, T.73, V.85, M.86, E.125, W.158, R.204, D.205, H.254, K.255, F.262 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.68, A:T.69, A:G.70, A:K.71, A:S.72, A:T.73, A:T.73, A:M.86, A:E.125, A:E.125, A:E.125, A:R.204, A:H.254, A:K.255 Water bridges: A:D.205, A:N.253 Salt bridges: A:K.71, A:D.205 pi-Cation interactions: A:K.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, L. et al., Structures of the yeast dynamin-like GTPase Sey1p provide insight into homotypic ER fusion. J.Cell Biol. (2015)

Release Date

2015-09-16

Peptides

Protein SEY1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein SEY1

Related Entries With Identical Sequence