SMTL ID : 5cbu.1

Human Cyclophilin D Complexed with Inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-functional Binders)

K.1: 1 residues within 4Å: Ligands: PGE.4 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: V.93, G.94, P.95, H.131 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: F.46, G.47, K.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.49 Water bridges: A:G.45, A:G.47, A:G.47, A:Y.48

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: I.57, P.58, S.59, W.121, K.148 Ligands: K.1 No protein-ligand interaction detected (PLIP)

2 x 4ZM: ethyl N-{[3-(pyridin-4-yl)benzyl]carbamoyl}glycinate(Non-covalent)

4ZM.5: 14 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, G.72, S.81, R.82, A.101, N.102, A.103, T.107, Q.111, F.113, H.126 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.60, A:A.101, A:Q.111, A:F.113 Hydrogen bonds: A:Q.63, A:R.82, A:N.102, A:N.102, A:N.102 Salt bridges: A:R.55, A:H.126 4ZM.6: 9 residues within 4Å: Chain A: T.52, H.54, H.70, N.71, G.150, T.152, S.153, K.154, K.155 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.155, A:K.155 Hydrogen bonds: A:T.52, A:H.70, A:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibson, R.P. et al., Human Cyclophilin D Complexed with Inhibitor. To Be Published

Release Date

2016-07-20

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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