SMTL ID : 5cbv.1

Human Cyclophilin D Complexed with Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-functional Binders)

K.1: 1 residues within 4Å: Ligands: PGE.4 No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 6 residues within 4Å: Chain A: C.40, T.41, G.42, K.49, D.160, C.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.160 Water bridges: A:C.40

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: V.93, G.94, P.95, H.131 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: I.57, P.58, S.59, F.60, W.121 Ligands: K.1 No protein-ligand interaction detected (PLIP)

1 x 4ZP: ethyl N-{[3-(pyridin-3-yl)benzyl]carbamoyl}glycinate(Non-covalent)

4ZP.5: 14 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, G.72, T.73, G.74, R.82, A.101, N.102, T.107, Q.111, F.113, H.126 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.60, A:A.101, A:Q.111, A:F.113 Hydrogen bonds: A:R.55, A:Q.63, A:N.102, A:N.102, A:N.102 Salt bridges: A:R.55, A:H.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibson, R.P. et al., Human Cyclophilin D Complexed with Inhibitor. To Be Published

Release Date

2016-07-20

Peptides

Human Cyclophilin D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Human Cyclophilin D

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