SMTL ID : 5cgd.1

Structure of the human class C GPCR metabotropic glutamate receptor 5 transmembrane domain in complex with the negative allosteric modulator 3-chloro-5-[6-(5-fluoropyridin-2-yl)pyrimidin-4-yl]benzonitrile - (HTL14242)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 10 residues within 4Å: Chain A: N.332, V.336, L.339, G.343, I.346, C.377, W.380, L.381, V.384, F.388 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.336, A:V.336, A:L.339, A:I.346, A:W.380, A:L.381, A:L.381, A:V.384, A:F.388 OLA.2: 8 residues within 4Å: Chain A: S.3, P.4, V.5, I.16, C.23, L.24, L.27 Ligands: OLA.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.16 Hydrogen bonds: A:V.5 OLA.3: 6 residues within 4Å: Chain A: Y.80, I.84, L.300, V.304, F.307, I.308 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.80, A:I.84, A:L.300, A:V.304, A:F.307 Hydrogen bonds: A:Y.80, A:Y.80 OLA.4: 6 residues within 4Å: Chain A: P.4, C.23, F.68, I.71, A.72 Ligands: OLA.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.68 Hydrogen bonds: A:K.73

1 x 51E: 3-chloro-5-[6-(5-fluoropyridin-2-yl)pyrimidin-4-yl]benzonitrile(Non-covalent)

51E.5: 19 residues within 4Å: Chain A: G.59, I.60, G.63, G.85, I.86, S.89, P.90, S.93, Y.94, V.335, L.339, W.380, F.383, M.397, S.400, V.401, S.404, A.405, A.408 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.60, A:I.86, A:P.90, A:W.380, A:V.401 pi-Stacking: A:W.380, A:F.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopher, J.A. et al., Fragment and Structure-Based Drug Discovery for a Class C GPCR: Discovery of the mGlu5 Negative Allosteric Modulator HTL14242 (3-Chloro-5-[6-(5-fluoropyridin-2-yl)pyrimidin-4-yl]benzonitrile). J.Med.Chem. (2015)

Release Date

2015-08-12

Peptides

Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5

Related Entries With Identical Sequence