SMTL ID : 5ckr.1

Crystal Structure of MraY in complex with Muraymycin D2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x 57M: Muraymycin D2(Non-covalent)

57M.1: 19 residues within 4Å: Chain A: K.76, T.81, N.196, D.199, G.200, L.201, D.202, N.261, F.268, M.269, G.270, D.271, S.274, V.308, Q.311, R.326, A.327, P.328, H.331 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.308, A:Q.311, A:A.327 Hydrogen bonds: A:K.76, A:T.81, A:T.81, A:N.196, A:D.199, A:D.202, A:D.202, A:N.261, A:G.270, A:S.274, A:Q.311, A:A.327, A:A.327, A:A.327 Water bridges: A:D.199, A:D.199, A:L.204 Salt bridges: A:R.326, A:H.331 pi-Stacking: A:F.268 57M.2: 19 residues within 4Å: Chain B: K.76, T.81, N.196, D.199, G.200, L.201, D.202, N.261, F.268, M.269, G.270, D.271, S.274, V.308, Q.311, R.326, A.327, P.328, H.331 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.308, B:Q.311, B:A.327 Hydrogen bonds: B:K.76, B:T.81, B:N.196, B:D.202, B:N.261, B:G.270, B:S.274, B:Q.311, B:A.327, B:A.327, B:A.327 Water bridges: B:D.199, B:D.199, B:L.204 Salt bridges: B:R.326, B:H.331 pi-Stacking: B:F.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, B.C. et al., Structural insights into inhibition of lipid I production in bacterial cell wall synthesis. Nature (2016)

Release Date

2016-03-02

Peptides

Phospho-N-acetylmuramoyl-pentapeptide-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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Phospho-N-acetylmuramoyl-pentapeptide-transferase

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