SMTL ID : 5cph.1 (1 other biounit)

Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x EVO: (3E)-3-(pyridin-3-ylmethylidene)-1,3-dihydro-2H-indol-2-one(Non-covalent)

EVO.1: 8 residues within 4Å: Chain A: N.55, S.56, E.59, D.82, I.87, P.88, I.103, T.151 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.55, A:I.87, A:I.87, A:I.103 Hydrogen bonds: A:D.82, A:T.151 Water bridges: A:R.85

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: T.81, D.82, H.121, K.148, T.149, G.150, T.151 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.149 Salt bridges: A:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mesleh, M.F. et al., Fragment-based discovery of DNA gyrase inhibitors targeting the ATPase subunit of GyrB. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-02-03

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

Related Entries With Identical Sequence