SMTL ID : 5ctu.1 (1 other biounit)

Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: T.81, D.82, N.83, H.121, K.148, T.149, G.150, T.151 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.83 Hydrogen bonds: A:H.121

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.89, D.90, R.122, N.123 Ligand excluded by PLIP

1 x 54X: 5-(thiophen-2-yl)thieno[2,3-d]pyrimidin-4(1H)-one(Non-covalent)

54X.3: 10 residues within 4Å: Chain A: N.55, S.56, E.59, D.82, R.85, G.86, I.87, P.88, I.103, T.151 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.87 Water bridges: A:I.52, A:S.56, A:G.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mesleh, M.F. et al., Fragment-based discovery of DNA gyrase inhibitors targeting the ATPase subunit of GyrB. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-02-03

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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