SMTL ID : 5cse.1 (1 other biounit)

Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-tetramer

Ligands

4 x SVP: chloro{di-tert-butyl[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]-lambda~5~-phosphanyl}(1-phenylprop-1-ene-1,3-diyl-kappa~2~C~1~,C~3~)palladium(Non-covalent)

SVP.1: 20 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128 Chain D: W.120, E.121 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:N.49, A:W.79, A:W.79, A:W.79, A:L.110, A:Y.112, D:E.121 Hydrogen bonds: A:N.23, A:S.27, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128 SVP.3: 19 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, L.124, D.128 Chain C: W.120, E.121 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:N.49, B:W.79, B:W.79, B:W.79, B:L.110, C:W.120, C:E.121 Hydrogen bonds: B:N.23, B:S.27, B:Y.43, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128 SVP.5: 20 residues within 4Å: Chain B: W.120, E.121 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:N.49, C:W.79, C:W.79, C:W.79, C:L.110, C:Y.112, B:E.121 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128 SVP.7: 19 residues within 4Å: Chain A: W.120, E.121 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, L.124, D.128 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:N.49, D:W.79, D:W.79, D:W.79, D:L.110, A:W.120, A:E.121 Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatterjee, A. et al., An enantioselective artificial Suzukiase based on the biotin-streptavidin technology. Chem Sci (2016)

Release Date

2015-11-04

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Streptavidin

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