SMTL ID : 5cse.2 (1 other biounit)

Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x SVP: chloro{di-tert-butyl[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]-lambda~5~-phosphanyl}(1-phenylprop-1-ene-1,3-diyl-kappa~2~C~1~,C~3~)palladium(Non-covalent)

SVP.1: 18 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.49, A:W.79, A:W.79, A:W.79, A:L.110, A:Y.112 Hydrogen bonds: A:N.23, A:S.27, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128 SVP.3: 17 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, L.124, D.128 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:N.49, B:W.79, B:W.79, B:W.79, B:L.110 Hydrogen bonds: B:N.23, B:S.27, B:Y.43, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatterjee, A. et al., An enantioselective artificial Suzukiase based on the biotin-streptavidin technology. Chem Sci (2016)

Release Date

2015-11-04

Peptides

Streptavidin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Streptavidin

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