SMTL ID : 5ctb.1 (1 other biounit)

Humanized yeast ACC carboxyltransferase domain bound to 6,7-dimethyl-1'-[(7-methyl-1H-indazol-5-yl)carbonyl]spiro[chromene-2,4'-piperidin]-4(3H)-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 57J: 6,7-dimethyl-1'-[(7-methyl-1H-indazol-5-yl)carbonyl]spiro[chromene-2,4'-piperidin]-4(3H)-one(Non-covalent)

57J.1: 20 residues within 4Å: Chain A: A.448, V.451, F.453, R.482, G.483, F.484, S.485, G.486, R.524, L.553, E.554, E.556, G.557, E.560, I.561 Chain B: T.285, A.289, L.290, K.292, V.293 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.448, A:V.451, A:L.553, A:I.561, B:T.285, B:A.289, B:V.293 Hydrogen bonds: A:G.486, A:E.554, A:E.560 Water bridges: A:F.484 57J.4: 20 residues within 4Å: Chain A: T.285, A.289, L.290, K.292, V.293 Chain B: A.448, V.451, F.453, R.482, G.483, F.484, S.485, G.486, R.524, L.553, E.554, E.556, G.557, E.560, I.561 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:T.285, A:A.289, A:V.293, B:A.448, B:V.451, B:L.553, B:I.561 Hydrogen bonds: B:G.486, B:E.554, B:E.560, B:E.560 Water bridges: B:F.484

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.682, S.685, W.686, K.713 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.685, A:W.686 Salt bridges: A:R.682, A:K.713 SO4.3: 6 residues within 4Å: Chain A: E.278, G.279, L.303, G.307, T.308, Q.309 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.279, A:Q.280, A:T.308, A:Q.309, A:Q.309 SO4.5: 4 residues within 4Å: Chain B: R.682, S.685, W.686, K.713 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.685, B:W.686 Salt bridges: B:R.682, B:K.713 SO4.6: 6 residues within 4Å: Chain B: E.278, G.279, L.303, G.307, T.308, Q.309 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.279, B:Q.280, B:T.308, B:Q.309, B:Q.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, D.W. et al., Discovery of spirocyclic-diamine inhibitors of mammalian acetyl CoA-carboxylase. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-10-14

Peptides

Acetyl-CoA carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Acetyl-CoA carboxylase

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