SMTL ID : 5cti.1

Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen (native form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain B: D.46, L.49, K.50, Q.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.46, B:Q.53 GOL.2: 4 residues within 4Å: Chain C: M.51, E.54, Q.55, Q.58 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.54, C:Q.58 GOL.3: 5 residues within 4Å: Chain A: F.56 Chain C: Q.55, Q.58, L.59, H.62 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boudko, S.P. et al., Structural insight for chain selection and stagger control in collagen. Sci Rep (2016)

Release Date

2016-08-03

Peptides

Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain: A
Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain: B
Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain

Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain

Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain

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