- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CD: CADMIUM ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 7 residues within 4Å:- Chain A: L.14, G.148, R.149, L.150, S.153
- Chain B: F.158, D.159
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Water bridges: B:F.158, A:S.153
- Hydrophobic interactions: A:L.14
- Hydrogen bonds: A:L.150, A:S.153
- Salt bridges: A:R.149
ACT.8: 7 residues within 4Å:- Chain A: F.158, D.159
- Chain B: L.14, G.148, R.149, L.150, S.153
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.14
- Hydrogen bonds: B:L.150, B:S.153
- Water bridges: B:S.153, A:F.158
- Salt bridges: B:R.149
- 2 x BB2: ACTINONIN(Non-covalent)
BB2.5: 18 residues within 4Å:- Chain A: H.43, G.44, V.45, G.46, Q.51, W.96, E.97, G.98, C.99, L.100, R.106, F.134, R.137, V.138, H.141, E.142, H.145
- Ligands: CD.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:E.97, A:L.100, A:F.134, A:R.137, A:V.138
- Hydrogen bonds: A:V.45, A:G.46, A:Q.51, A:G.98, A:G.98, A:L.100
BB2.10: 18 residues within 4Å:- Chain B: H.43, G.44, V.45, G.46, Q.51, W.96, E.97, G.98, C.99, L.100, R.106, F.134, R.137, V.138, H.141, E.142, H.145
- Ligands: CD.7
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:E.97, B:L.100, B:F.134, B:R.137, B:V.138
- Hydrogen bonds: B:V.45, B:G.46, B:Q.51, B:G.98, B:G.98, B:L.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ngo, H.P.T. et al., Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae, in complex with actinonin. To Be Published
- Release Date
- 2016-08-03
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CD: CADMIUM ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x BB2: ACTINONIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ngo, H.P.T. et al., Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae, in complex with actinonin. To Be Published
- Release Date
- 2016-08-03
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A