SMTL ID : 5cvu.2 (1 other biounit)

sinpyl alcohol bound monolignol 4-O-methyltransferase 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 55B: 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenol(Non-covalent)

55B.1: 14 residues within 4Å: Chain A: L.133, A.134, I.165, W.166, F.179, W.269, H.272, D.273, T.319, L.322, M.323, Y.326, N.327 Ligands: SAH.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.179, A:Y.326 Hydrogen bonds: A:H.272, A:N.327 55B.6: 15 residues within 4Å: Chain B: F.130, A.134, L.139, I.165, W.166, F.179, W.269, H.272, D.273, T.319, L.322, M.323, Y.326, N.327 Ligands: SAH.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.130, B:F.179, B:Y.326 Hydrogen bonds: B:W.269

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 19 residues within 4Å: Chain A: W.166, F.179, M.183, S.187, G.211, G.213, D.234, L.235, V.238, G.253, D.254, M.255, F.256, K.268, W.269, I.270, D.273, W.274 Ligands: 55B.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.187, A:G.211, A:G.213, A:L.235, A:D.254, A:M.255, A:K.268 Water bridges: A:K.268, A:K.268, A:K.268, A:D.273 Salt bridges: A:K.268 pi-Stacking: A:W.166 SAH.7: 19 residues within 4Å: Chain B: W.166, F.179, M.183, S.187, G.211, G.213, D.234, L.235, V.238, G.253, D.254, M.255, F.256, K.268, W.269, I.270, D.273, W.274 Ligands: 55B.6 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.187, B:G.213, B:L.235, B:D.254, B:M.255, B:K.268 Water bridges: B:M.183, B:K.268 Salt bridges: B:K.268 pi-Stacking: B:W.166

5 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 7 residues within 4Å: Chain A: K.120, G.124, V.125, S.126, P.129, K.181, S.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.120, A:S.126, A:K.181, A:K.181, A:S.185 NO3.4: 6 residues within 4Å: Chain A: M.197, Y.198, N.199, G.200, K.351, A.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.199, A:N.199, A:K.351 NO3.5: 3 residues within 4Å: Chain A: D.276, E.277, L.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.277 NO3.8: 2 residues within 4Å: Chain B: N.158, K.159 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.159 Water bridges: B:N.158 NO3.9: 7 residues within 4Å: Chain B: K.120, G.124, V.125, S.126, P.129, K.181, S.185 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.120, B:S.126, B:K.181, B:S.185, B:S.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, Y. et al., Structure of sinapyl alcohol bound monolignol 4-O-methyltransferase at 1.60 Angstroms resolution. To Be Published

Release Date

2015-09-16

Peptides

(Iso)eugenol O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

(Iso)eugenol O-methyltransferase

Related Entries With Identical Sequence