SMTL ID : 5d2j.1 (1 other biounit)

4-oxalocrotonate decarboxylase from Pseudomonas putida G7 - complexed with magnesium and adipate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.114, E.116, E.147 Ligands: 0L1.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.114, A:E.116, A:E.147, H2O.1, H2O.2 MG.2: 2 residues within 4Å: Chain A: L.27, N.28 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:L.27, H2O.7, H2O.9

1 x 0L1: hexanedioic acid(Non-covalent)

0L1.3: 13 residues within 4Å: Chain A: K.69, G.71, L.72, K.77, E.114, E.147, I.149, S.151, F.158, V.163, A.168, S.169 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.163 Hydrogen bonds: A:L.72, A:S.169 Water bridges: A:S.151 Salt bridges: A:K.69, A:K.77

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: Y.48, Y.88, L.223, L.224, E.226, R.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.88 EDO.5: 3 residues within 4Å: Chain A: R.55, I.65, L.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.55, A:R.55, A:I.65 Water bridges: A:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guimaraes, S.L. et al., Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. Biochemistry (2016)

Release Date

2016-05-04

Peptides

4-oxalocrotonate decarboxylase NahK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-oxalocrotonate decarboxylase NahK

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