- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 6 residues within 4Å:- Chain A: I.255, H.304
- Chain B: D.96, H.98, H.133
- Ligands: CU.9
Ligand excluded by PLIPCL.10: 6 residues within 4Å:- Chain B: I.255, H.304
- Chain C: D.96, H.98, H.133
- Ligands: CU.16
Ligand excluded by PLIPCL.14: 7 residues within 4Å:- Chain A: D.96, H.98, H.133
- Chain C: H.253, I.255, H.304
- Ligands: CU.2
Ligand excluded by PLIP- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: F.22, V.23, K.172, I.173, Y.174
- Ligands: ACY.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.23, A:V.23, A:I.173
GOL.5: 5 residues within 4Å:- Chain A: I.50, D.51, D.52, A.221, V.222
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.50
GOL.6: 7 residues within 4Å:- Chain A: Y.191, T.214, H.215, V.222, E.311, L.312
- Chain B: R.209
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.311, B:R.209, B:R.209
- Water bridges: A:Y.191
GOL.11: 8 residues within 4Å:- Chain B: D.51, Y.191, T.214, H.215, V.222, E.311, L.312
- Chain C: R.209
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:E.311, B:L.312, C:R.209, C:R.209
- Water bridges: B:D.51, B:T.55
GOL.12: 4 residues within 4Å:- Chain B: W.324, D.326, T.330, S.331
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.330, B:S.331
GOL.17: 5 residues within 4Å:- Chain A: L.104, A.135, V.140
- Chain C: I.255, A.300
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.317
GOL.18: 4 residues within 4Å:- Chain C: W.324, D.326, T.330, S.331
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.330, C:S.331
GOL.19: 9 residues within 4Å:- Chain A: T.210, L.211, T.212
- Chain B: T.210, L.211, T.212
- Chain C: T.210, L.211, T.212
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:L.211, C:T.210
GOL.20: 3 residues within 4Å:- Chain C: V.49, D.51, D.52
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.51
GOL.21: 7 residues within 4Å:- Chain C: V.57, H.58, S.146, Y.182, P.184, A.200, T.204
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.58, C:H.58, C:V.145, C:T.204
- 3 x ACY: ACETIC ACID(Non-functional Binders)
ACY.7: 3 residues within 4Å:- Chain A: H.26, D.171
- Ligands: GOL.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.28
- Salt bridges: A:H.26
ACY.13: 10 residues within 4Å:- Chain A: F.310, E.311
- Chain B: G.138, M.139, V.140, P.141, W.142, Y.201, V.205, M.208
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:P.141
- Hydrogen bonds: B:M.139, B:W.142, A:E.311
- Water bridges: B:Y.201
ACY.22: 3 residues within 4Å:- Chain C: H.26, Q.28, D.171
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.26, C:Q.28
- Salt bridges: C:H.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-03-09
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 3 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-03-09
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C