SMTL ID : 5d5a.1

In meso in situ serial X-ray crystallography structure of the Beta2-adrenergic receptor at 100 K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 10 residues within 4Å: Chain A: E.247, G.266, H.267, L.268, D.306, V.339, F.340, Q.341, G.343, R.381 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.381, A:L.268, A:D.306, A:D.306 Water bridges: A:D.256, A:E.258

1 x CAU: (2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol(Non-covalent)

CAU.2: 17 residues within 4Å: Chain A: T.117, D.120, V.121, V.124, T.125, F.200, Y.206, S.210, S.211, S.214, W.421, F.424, F.425, N.428, Y.443, N.447, Y.451 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.117, A:V.121, A:V.124, A:Y.206 Hydrogen bonds: A:D.120, A:S.210, A:N.447, A:N.447, A:Y.451 pi-Stacking: A:F.200, A:F.425

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.3: 5 residues within 4Å: Chain A: F.230, K.234, K.398, F.399, H.404 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.399 Hydrogen bonds: A:K.398, A:F.399, A:H.404 Water bridges: A:C.400 BU1.4: 3 residues within 4Å: Chain A: V.223, G.411, G.415 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.223

1 x ACM: ACETAMIDE(Covalent)

ACM.5: 3 residues within 4Å: Chain A: K.398, F.399, C.400 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.398

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.6: 8 residues within 4Å: Chain A: Y.77, T.80, C.84, L.122, R.158, I.161, W.165 Ligands: CLR.8 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.80, A:L.122, A:R.158, A:W.165, A:W.165 CLR.7: 4 residues within 4Å: Chain A: V.55, F.56, L.474 Ligands: PLM.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.55, A:F.56 CLR.8: 4 residues within 4Å: Chain A: I.62, L.87, A.92 Ligands: CLR.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.62, A:L.87, A:A.92

1 x PLM: PALMITIC ACID(Covalent)

PLM.9: 4 residues within 4Å: Chain A: L.474, L.475, C.476 Ligands: CLR.7 No protein-ligand interaction detected (PLIP)

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.10: 5 residues within 4Å: Chain A: D.308, Y.324, A.329, R.332, I.336 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 6 residues within 4Å: Chain A: T.73, V.74, T.75, R.138, Q.149, S.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.73, A:V.74, A:T.75, A:T.75, A:S.150 Salt bridges: A:R.138 SO4.12: 4 residues within 4Å: Chain A: F.399, K.405, K.408, R.463 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.399 Salt bridges: A:K.405, A:K.408, A:R.463 SO4.13: 5 residues within 4Å: Chain A: F.350, T.351, N.352, S.353, N.368 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.349, A:T.351, A:N.352, A:N.352, A:S.353, A:N.368 SO4.14: 4 residues within 4Å: Chain A: T.378, P.379, N.380, R.381 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.380, A:N.380, A:R.381 Water bridges: A:R.384, A:R.384, A:R.384 SO4.15: 4 residues within 4Å: Chain A: R.331, W.362, R.390, T.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.391 Salt bridges: A:R.331 SO4.16: 4 residues within 4Å: Chain A: L.249, R.250, L.251, K.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.251, A:K.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-01-13

Peptides

Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor

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