SMTL ID : 5d6l.1

beta2AR-T4L - CIM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 10 residues within 4Å: Chain A: E.247, G.266, H.267, L.268, D.306, V.339, F.340, Q.341, G.343, R.381 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.247, A:R.381, A:R.381, A:G.266, A:L.268

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: T.73, V.74, T.75, R.138, Y.148, Q.149, S.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.74, A:T.75, A:T.75, A:Y.148, A:S.150 Salt bridges: A:R.138 SO4.3: 4 residues within 4Å: Chain A: F.399, K.405, K.408, R.463 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.399 Salt bridges: A:K.405, A:K.408, A:R.463 SO4.4: 6 residues within 4Å: Chain A: G.349, F.350, T.351, N.352, S.353, N.368 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.349, A:N.352, A:N.352, A:S.353, A:N.368 SO4.5: 4 residues within 4Å: Chain A: T.378, P.379, N.380, R.381 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.380, A:N.380, A:R.381 SO4.6: 4 residues within 4Å: Chain A: R.331, W.362, R.390, T.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.391 Salt bridges: A:R.331 SO4.7: 3 residues within 4Å: Chain A: R.250, L.251, K.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.251, A:K.252 Salt bridges: A:R.250

1 x CAU: (2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol(Non-covalent)

CAU.8: 17 residues within 4Å: Chain A: W.116, D.120, V.121, V.124, T.125, F.200, Y.206, S.210, S.211, S.214, W.421, F.424, F.425, N.428, Y.443, N.447, Y.451 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.116, A:V.121, A:V.124, A:F.200, A:Y.206, A:F.424 Hydrogen bonds: A:D.120, A:S.210, A:N.447, A:N.447, A:Y.451 pi-Stacking: A:F.425

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.9: 5 residues within 4Å: Chain A: F.230, K.234, K.398, F.399, H.404 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.234, A:F.399 Hydrogen bonds: A:K.398, A:K.398, A:F.399, A:H.404 BU1.10: 2 residues within 4Å: Chain A: G.411, G.415 No protein-ligand interaction detected (PLIP)

1 x ACM: ACETAMIDE(Covalent)

ACM.11: 3 residues within 4Å: Chain A: K.398, F.399, C.400 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.398

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.12: 10 residues within 4Å: Chain A: Y.77, T.80, C.84, V.88, I.119, L.122, R.158, I.161, W.165 Ligands: CLR.14 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.80, A:V.88, A:I.119, A:L.122, A:I.161, A:W.165 CLR.13: 7 residues within 4Å: Chain A: V.55, F.56, V.59, L.60, L.91, L.474 Ligands: PLM.15 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.55, A:F.56, A:V.59, A:L.60, A:L.91 CLR.14: 3 residues within 4Å: Chain A: I.62, L.87 Ligands: CLR.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.62, A:L.87

1 x PLM: PALMITIC ACID(Covalent)

PLM.15: 4 residues within 4Å: Chain A: L.474, L.475, C.476 Ligands: CLR.13 No protein-ligand interaction detected (PLIP)

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.16: 4 residues within 4Å: Chain A: D.308, Y.324, R.332, I.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, P. et al., The cubicon method for concentrating membrane proteins in the cubic mesophase. Nat Protoc (2017)

Release Date

2016-08-17

Peptides

Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor

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