SMTL ID : 5d8v.1

Ultra-high resolution structure of high-potential iron-sulfur protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.48 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 13 residues within 4Å: Chain A: Y.19, C.43, C.46, F.48, M.49, C.61, L.63, F.64, I.69, W.74, C.75, S.77, W.78 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.43, A:C.46, A:C.61, A:C.75

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.18 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.18, A:K.18, A:K.18 Salt bridges: A:K.18 SO4.3: 2 residues within 4Å: Chain A: H.42, A.44 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.42 SO4.4: 6 residues within 4Å: Chain A: M.49, Q.50, A.51, N.52, V.53 Ligands: GOL.9 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.51, A:N.52 Water bridges: A:M.49, A:K.81, A:K.81, A:K.81, A:K.81 SO4.5: 5 residues within 4Å: Chain A: A.6, V.7, T.8, D.11, K.67 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.8, A:T.8 Water bridges: A:N.5, A:K.67, A:K.67 Salt bridges: A:K.67 SO4.6: 2 residues within 4Å: Chain A: A.1, A.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: K.18, E.27 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.18, A:E.27 Water bridges: A:I.15 GOL.8: 4 residues within 4Å: Chain A: I.15, A.16, K.18 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.18 GOL.9: 4 residues within 4Å: Chain A: Q.50, N.52, V.53 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirano, Y. et al., Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 angstrom. Nature (2016)

Release Date

2016-05-25

Peptides

High-potential iron-sulfur protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High-potential iron-sulfur protein

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