SMTL ID : 5wqq.1

High resolution structure of high-potential iron-sulfur protein in the oxidized state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.80 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 13 residues within 4Å: Chain A: Y.19, C.43, C.46, F.48, M.49, C.61, L.63, F.64, I.69, W.74, C.75, S.77, W.78 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.43, A:C.46, A:C.61, A:C.75

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.42, A.44, N.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.42 SO4.3: 5 residues within 4Å: Chain A: A.6, V.7, T.8, D.11, K.67 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.6, A:T.8, A:D.11 Water bridges: A:K.67, A:K.67, A:K.67 Salt bridges: A:K.67 SO4.4: 1 residues within 4Å: Chain A: K.18 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.18 SO4.5: 6 residues within 4Å: Chain A: M.49, Q.50, A.51, N.52, V.53 Ligands: GOL.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.51, A:N.52 Water bridges: A:K.81, A:K.81, A:K.81 SO4.6: 2 residues within 4Å: Chain A: A.1, A.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.2 Water bridges: A:Q.21

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain A: K.18, E.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.18, A:E.27 Water bridges: A:I.15 GOL.8: 5 residues within 4Å: Chain A: Q.47, F.48, M.49, Q.50, Q.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.47, A:Q.47 GOL.9: 4 residues within 4Å: Chain A: Q.50, N.52, V.53 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohno, H. et al., Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution. PLoS ONE (2017)

Release Date

2017-06-07

Peptides

High-potential iron-sulfur protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High-potential iron-sulfur protein

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