SMTL ID : 5da8.1 (1 other biounit)

Crystal structure of chaperonin GroEL from

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-14-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.31, D.87, G.88, T.90, T.91 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.87, A:G.88, A:T.90, A:T.90, A:T.91, A:T.91 SO4.3: 6 residues within 4Å: Chain B: L.31, D.87, G.88, T.89, T.90, T.91 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.88, B:T.89, B:T.90, B:T.91, B:T.91 SO4.5: 6 residues within 4Å: Chain C: L.31, D.87, G.88, T.89, T.90, T.91 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.87, C:G.88, C:T.90, C:T.91 SO4.6: 6 residues within 4Å: Chain D: L.31, D.87, G.88, T.89, T.90, T.91 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.88, D:T.89, D:T.90, D:T.90, D:T.90, D:T.91, D:T.91 SO4.7: 6 residues within 4Å: Chain E: L.31, D.87, G.88, T.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:D.87, E:G.88, E:T.89, E:T.90, E:T.90, E:T.91 SO4.8: 6 residues within 4Å: Chain F: L.31, D.87, G.88, T.89, T.90, T.91 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:D.87, F:G.88, F:T.89, F:T.90, F:T.91, F:T.91, F:T.91 SO4.10: 6 residues within 4Å: Chain G: L.31, D.87, G.88, T.89, T.90, T.91 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:D.87, G:G.88, G:T.89, G:T.90, G:T.90, G:T.91, G:T.91, G:T.91 SO4.14: 6 residues within 4Å: Chain J: L.31, D.87, G.88, T.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain J Hydrogen bonds: J:D.87, J:G.88, J:T.89, J:T.90, J:T.90, J:T.91 SO4.16: 6 residues within 4Å: Chain K: L.31, D.87, G.88, T.89, T.90, T.91 8 PLIP interactions: 8 interactions with chain K Hydrogen bonds: K:D.87, K:G.88, K:T.89, K:T.90, K:T.90, K:T.91, K:T.91, K:T.91 SO4.18: 6 residues within 4Å: Chain L: L.31, D.87, G.88, T.89, T.90, T.91 7 PLIP interactions: 7 interactions with chain L Hydrogen bonds: L:D.87, L:G.88, L:T.89, L:T.90, L:T.91, L:T.91, L:T.91 SO4.20: 4 residues within 4Å: Chain M: L.31, D.87, G.88, T.90 6 PLIP interactions: 6 interactions with chain M Hydrogen bonds: M:G.32, M:D.87, M:T.90, M:T.90, M:T.91, M:T.91 SO4.22: 5 residues within 4Å: Chain N: L.31, D.87, G.88, T.90, T.91 5 PLIP interactions: 5 interactions with chain N Hydrogen bonds: N:G.88, N:T.89, N:T.90, N:T.91, N:T.91

8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 2 residues within 4Å: Chain A: K.42, K.43 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.43 CA.4: 2 residues within 4Å: Chain B: K.42, K.43 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:K.43 CA.9: 1 residues within 4Å: Chain F: K.43 No protein-ligand interaction detected (PLIP) CA.11: 2 residues within 4Å: Chain G: D.41, K.43 No protein-ligand interaction detected (PLIP) CA.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.15: 3 residues within 4Å: Chain J: D.41, K.42, K.43 No protein-ligand interaction detected (PLIP) CA.17: 2 residues within 4Å: Chain K: K.42, K.43 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:K.43 CA.21: 2 residues within 4Å: Chain M: K.42, K.43 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:K.43

2 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 4 residues within 4Å: Chain H: T.30, G.32, G.35, K.51 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:T.30, H:G.32, H:K.51 MG.19: 3 residues within 4Å: Chain M: T.30, G.32, K.51 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:T.30, M:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of chaperonin GroEL from. To Be Published

Release Date

2015-10-14

Peptides

60 kDa chaperonin: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

60 kDa chaperonin

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