SMTL ID : 5da8.2 (1 other biounit)

Crystal structure of chaperonin GroEL from

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-14-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: K.42, K.43 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.43 CA.3: 2 residues within 4Å: Chain B: D.41, K.42 No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain C: K.43 No protein-ligand interaction detected (PLIP) CA.8: 2 residues within 4Å: Chain D: K.42, K.43 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:K.43 CA.12: 1 residues within 4Å: Chain F: K.43 No protein-ligand interaction detected (PLIP) CA.14: 1 residues within 4Å: Chain G: K.43 No protein-ligand interaction detected (PLIP) CA.17: 2 residues within 4Å: Chain H: D.41, K.43 No protein-ligand interaction detected (PLIP) CA.19: 3 residues within 4Å: Chain K: D.41, K.42, K.43 No protein-ligand interaction detected (PLIP) CA.21: 1 residues within 4Å: Chain L: K.43 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:K.43 CA.23: 1 residues within 4Å: Chain M: K.43 No protein-ligand interaction detected (PLIP)

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain B: L.31, D.87, G.88, T.89, T.90, T.91 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.88, B:T.90, B:T.91, B:T.91 SO4.7: 6 residues within 4Å: Chain D: L.31, D.87, G.88, T.89, T.90, T.91 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.87, D:G.88, D:T.89, D:T.90, D:T.91, D:T.91, D:T.91 SO4.11: 6 residues within 4Å: Chain F: L.31, D.87, G.88, T.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:D.87, F:G.88, F:T.89, F:T.90, F:T.91, F:T.91 SO4.13: 5 residues within 4Å: Chain G: D.87, G.88, T.89, T.90, T.91 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.88, G:T.89, G:T.90, G:T.90, G:T.91 SO4.16: 6 residues within 4Å: Chain H: L.31, D.87, G.88, T.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:D.87, H:G.88, H:T.89, H:T.90, H:T.90, H:T.91 SO4.18: 6 residues within 4Å: Chain K: L.31, D.87, G.88, T.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain K Hydrogen bonds: K:D.87, K:G.88, K:T.89, K:T.90, K:T.91, K:T.91 SO4.20: 5 residues within 4Å: Chain L: L.31, D.87, G.88, T.90, T.91 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:G.32, L:G.88, L:T.90, L:T.91, L:T.91 SO4.22: 6 residues within 4Å: Chain M: L.31, D.87, G.88, T.89, T.90, T.91 7 PLIP interactions: 7 interactions with chain M Hydrogen bonds: M:D.87, M:G.88, M:T.89, M:T.90, M:T.90, M:T.91, M:T.91 SO4.24: 6 residues within 4Å: Chain N: L.31, D.87, G.88, T.89, T.90, T.91 5 PLIP interactions: 5 interactions with chain N Hydrogen bonds: N:G.88, N:T.90, N:T.90, N:T.91, N:T.91

5 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain C: T.30, L.31, K.51, G.53 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.30, C:T.30, C:K.51 MG.6: 3 residues within 4Å: Chain D: T.30, G.32, K.51 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.30, D:G.32 MG.9: 3 residues within 4Å: Chain E: T.30, G.32, K.51 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:T.30, E:G.32, E:K.51 MG.10: 2 residues within 4Å: Chain F: T.30, G.32 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain H: T.30, L.31, K.51, G.53 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:T.30, H:T.30, H:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of chaperonin GroEL from. To Be Published

Release Date

2015-10-14

Peptides

60 kDa chaperonin: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
Q

D
R

E
S

F
T

G
U

H
V

I
W

J
X

K
Y

L
Z

M
a

N
b

60 kDa chaperonin

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