SMTL ID : 5dah.3 (2 other biounits)

Crystal structure of PZP domain of human AF10 protein fused with Histone H3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-2-2-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, H.52, C.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:H.52, A:C.55 ZN.2: 4 residues within 4Å: Chain A: C.42, C.47, C.68, C.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.47, A:C.68, A:C.71 ZN.3: 5 residues within 4Å: Chain A: C.82, C.85, H.102, C.105, T.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.82, A:C.85, A:H.102, A:C.105 ZN.4: 4 residues within 4Å: Chain A: C.137, C.140, H.167, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.137, A:C.140, A:H.167, A:C.170 ZN.5: 4 residues within 4Å: Chain A: C.157, C.162, C.194, H.197 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.157, A:C.162, A:C.194, A:H.197 ZN.8: 4 residues within 4Å: Chain B: C.25, C.28, H.52, C.55 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.25, B:C.28, B:H.52, B:C.55 ZN.9: 4 residues within 4Å: Chain B: C.42, C.47, C.68, C.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.47, B:C.68, B:C.71 ZN.10: 4 residues within 4Å: Chain B: C.82, C.85, H.102, C.105 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.82, B:C.85, B:H.102, B:C.105 ZN.11: 4 residues within 4Å: Chain B: C.137, C.140, H.167, C.170 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.137, B:C.140, B:H.167, B:C.170 ZN.12: 4 residues within 4Å: Chain B: C.157, C.162, C.194, H.197 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.157, B:C.162, B:C.194, B:H.197

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: R.145, E.146, S.147, K.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.147, A:K.148 Salt bridges: A:R.145 SO4.7: 2 residues within 4Å: Chain A: H.160, G.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.161 Salt bridges: A:H.160 SO4.13: 5 residues within 4Å: Chain B: G.144, R.145, E.146, S.147, K.148 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.144, B:S.147, B:K.148 Salt bridges: B:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, S. et al., The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79. Mol.Cell (2015)

Release Date

2015-10-21

Peptides

Protein AF-10: AB
Histone H3 peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein AF-10

Histone H3 peptide

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