SMTL ID : 5dbf.2 (1 other biounit)

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 30 residues within 4Å: Chain A: G.11, V.12, T.13, G.14, I.15, V.16, A.40, R.41, R.42, C.58, D.59, V.60, S.61, V.82, S.83, W.84, M.96, Q.117, T.118, G.119, F.152, Y.153, P.176, A.177, V.179, C.185, S.186, M.187, M.188, F.317 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.179 Hydrogen bonds: A:G.11, A:T.13, A:T.13, A:T.13, A:I.15, A:V.16, A:R.41, A:R.42, A:D.59, A:V.60, A:S.61, A:W.84, A:Q.117, A:Q.117, A:V.179, A:M.187, A:M.188 Salt bridges: A:R.42 NDP.2: 30 residues within 4Å: Chain B: G.11, V.12, T.13, G.14, I.15, V.16, A.40, R.41, R.42, C.58, D.59, V.60, S.61, V.82, S.83, W.84, M.96, Q.117, T.118, G.119, F.152, Y.153, P.176, A.177, V.179, C.185, S.186, M.187, M.188, F.317 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:V.179 Hydrogen bonds: B:G.11, B:T.13, B:T.13, B:T.13, B:I.15, B:V.16, B:R.41, B:R.42, B:D.59, B:D.59, B:V.60, B:S.61, B:W.84, B:Q.117, B:Q.117, B:Y.153, B:V.179, B:M.187, B:M.188 Salt bridges: B:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.M. et al., Structures of Iridoid Synthase from Cantharanthus roseus with Bound NAD(+) , NADPH, or NAD(+) /10-Oxogeranial: Reaction Mechanisms. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-11-04

Peptides

Iridoid synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Iridoid synthase

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