- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- monomer
- Ligands
- 1 x 58U: (4S)-4-methyl-2,5,7-trioxoheptanoic acid(Covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.7: 1 residues within 4Å:- Chain A: D.344
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.344
PEG.8: 5 residues within 4Å:- Chain A: I.133, K.134, I.135, F.145, W.155
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.133, A:I.135, A:G.143
PEG.9: 2 residues within 4Å:- Chain A: E.158, H.159
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.159
PEG.10: 7 residues within 4Å:- Chain A: P.331, G.332, N.340, I.341, P.342, Q.345
- Ligands: PGE.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.332, A:N.340
- Water bridges: A:I.333
PEG.11: 2 residues within 4Å:- Chain A: D.196, H.313
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.196, A:H.313, A:H.313
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.12: 7 residues within 4Å:- Chain A: I.236, E.321, V.323, W.339, I.341, P.342
- Ligands: GOL.15
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.341
- Water bridges: A:W.343, A:W.343
PGE.13: 12 residues within 4Å:- Chain A: M.102, E.113, P.114, A.116, E.152, R.154, G.240, S.241, Q.272, Y.275, R.316, L.336
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.113, A:S.241, A:Y.275, A:R.316
PGE.14: 12 residues within 4Å:- Chain A: R.126, Y.146, W.147, L.148, N.149, G.332, I.333, I.341, Q.345, N.350, A.353
- Ligands: PEG.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.126, A:R.126, A:Y.146, A:A.353
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.15: 6 residues within 4Å:- Chain A: E.158, H.159, F.160, I.236, W.339
- Ligands: PGE.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:F.160, A:W.339
- Water bridges: A:E.158, A:H.159
GOL.16: 5 residues within 4Å:- Chain A: A.34, A.35, V.36, L.50, W.57
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.36
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bianchet, M.A. et al., Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem. (2017)
- Release Date
- 2016-10-05
- Peptides
- L,D-transpeptidase 2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- monomer
- Ligands
- 1 x 58U: (4S)-4-methyl-2,5,7-trioxoheptanoic acid(Covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bianchet, M.A. et al., Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem. (2017)
- Release Date
- 2016-10-05
- Peptides
- L,D-transpeptidase 2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B