- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- monomer
- Ligands
- 1 x 58U: (4S)-4-methyl-2,5,7-trioxoheptanoic acid(Covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: R.242, R.316
- Ligands: PEG.10
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.242, A:R.242, A:R.242
- Salt bridges: A:R.242, A:R.316
SO4.3: 4 residues within 4Å:- Chain A: R.44, Q.62, R.67
- Ligands: SO4.4
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.67
SO4.4: 5 residues within 4Å:- Chain A: N.40, N.42, R.44, R.67
- Ligands: SO4.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.40, A:N.42
- Salt bridges: A:R.44, A:R.67
SO4.5: 4 residues within 4Å:- Chain A: R.49, S.51, P.52, R.56
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.56
- Salt bridges: A:R.49, A:R.56
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 5 residues within 4Å:- Chain A: I.133, K.134, I.135, F.145, W.155
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.135, A:I.135
PEG.7: 2 residues within 4Å:- Chain A: E.158, H.159
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.159
PEG.8: 7 residues within 4Å:- Chain A: T.329, L.330, P.331, G.332, N.340, I.341
- Ligands: PGE.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.330, A:G.332
- Water bridges: A:I.333, A:Q.345
PEG.9: 2 residues within 4Å:- Chain A: D.196, H.313
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.196, A:H.313
- Water bridges: A:D.196
PEG.10: 8 residues within 4Å:- Chain A: M.102, P.103, G.104, E.107, V.108, V.109, R.316
- Ligands: SO4.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.104, A:V.108
- Water bridges: A:R.316
PEG.11: 6 residues within 4Å:- Chain A: D.125, A.128, K.131, A.132, V.176, D.177
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.131, A:D.177, A:D.177
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.12: 6 residues within 4Å:- Chain A: I.236, E.321, V.323, W.339, N.340, P.342
No protein-ligand interaction detected (PLIP)PGE.13: 9 residues within 4Å:- Chain A: M.102, E.113, P.114, A.116, G.240, S.241, Q.272, Y.275, R.316
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.113, A:S.241, A:Q.272, A:Y.275, A:R.316
PGE.14: 10 residues within 4Å:- Chain A: R.126, Y.146, W.147, L.148, N.149, I.333, Q.345, N.350, A.353
- Ligands: PEG.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.126, A:R.126, A:Y.146, A:N.350
- Water bridges: A:Q.345
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.15: 5 residues within 4Å:- Chain A: E.158, H.159, F.160, I.236, W.339
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.160, A:W.339
- Water bridges: A:R.156
GOL.16: 4 residues within 4Å:- Chain A: A.35, V.36, L.50, W.57
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.36, A:V.36
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bianchet, M.A. et al., Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem. (2017)
- Release Date
- 2016-09-28
- Peptides
- L,D-transpeptidase 2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- monomer
- Ligands
- 1 x 58U: (4S)-4-methyl-2,5,7-trioxoheptanoic acid(Covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bianchet, M.A. et al., Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem. (2017)
- Release Date
- 2016-09-28
- Peptides
- L,D-transpeptidase 2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B