SMTL ID : 5dce.1

Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated (Tryptophan)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: C.63, H.270, E.304, D.324 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.63, A:H.270, A:E.304, A:D.324, H2O.2 MN.3: 4 residues within 4Å: Chain B: C.63, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.63, B:H.270, B:E.304, B:D.324 MN.5: 4 residues within 4Å: Chain C: C.63, H.270, E.304, D.324 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.63, C:H.270, C:E.304, C:D.324, H2O.7 MN.7: 5 residues within 4Å: Chain D: C.63, R.94, H.270, E.304, D.324 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.63, D:H.270, D:E.304, D:D.324

4 x TRP: TRYPTOPHAN(Non-covalent)

TRP.2: 13 residues within 4Å: Chain A: Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, V.214, K.216, V.223 Chain B: D.8, D.9 9 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Q.153, A:V.223 Hydrogen bonds: A:Q.153, A:S.182, A:S.213, A:K.216, B:D.9, B:D.9, W.2 TRP.4: 13 residues within 4Å: Chain A: D.8, D.9 Chain B: M.149, Q.153, A.156, L.177, G.180, L.181, S.182, S.213, V.214, K.216, V.223 9 PLIP interactions: 1 Ligand-Ligand interactions, 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: W.4, B:Q.153, B:S.182, B:S.213, B:K.216, A:D.9, A:D.9 Hydrophobic interactions: B:Q.153, B:V.223 TRP.6: 12 residues within 4Å: Chain C: Q.153, A.156, G.180, L.181, S.182, S.213, V.214, K.216, V.223 Chain D: D.8, D.9, I.12 10 PLIP interactions: 4 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:I.12, C:Q.153, C:V.223 Hydrogen bonds: D:D.8, D:D.9, D:D.9, C:Q.153, C:S.182, C:S.213, C:K.216 TRP.8: 13 residues within 4Å: Chain C: D.8, D.9, I.12, V.15 Chain D: Q.153, A.156, G.180, L.181, S.182, S.213, V.214, K.216, V.223 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:I.12, C:V.15, D:Q.153, D:V.223 Hydrogen bonds: C:D.8, C:D.9, C:D.9, D:Q.153, D:S.182, D:S.213, D:K.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cross, P.J. et al., The Functional Unit of Neisseria meningitidis 3-Deoxy--Arabino-Heptulosonate 7-Phosphate Synthase Is Dimeric. Plos One (2016)

Release Date

2016-08-24

Peptides

Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phospho-2-dehydro-3-deoxyheptonate aldolase

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