SMTL ID : 5dhg.3 (2 other biounits)

The crystal structure of nociceptin/orphanin FQ peptide receptor (NOP) in complex with C-35 (PSI Community Target)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x DGV: 1-benzyl-N-{3-[4-(2,6-dichlorophenyl)piperidin-1-yl]propyl}-D-prolinamide(Non-covalent)

DGV.1: 14 residues within 4Å: Chain A: Q.181, D.184, W.190, I.201, D.204, Y.205, M.208, C.274, I.293, S.297, V.353, Q.354, V.357, Y.383 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.190, A:I.201, A:D.204, A:Y.205, A:M.208, A:I.293 Hydrogen bonds: A:Q.181 Salt bridges: A:D.204 Halogen bonds: A:V.353 DGV.5: 14 residues within 4Å: Chain B: Q.181, D.184, W.190, I.201, D.204, Y.205, M.208, C.274, I.293, W.350, Q.354, V.357, T.379, Y.383 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Q.181, B:D.184, B:I.201, B:D.204, B:Y.205, B:M.208, B:I.293, B:W.350 Hydrogen bonds: B:Q.181 Salt bridges: B:D.184, B:D.204

5 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 4 residues within 4Å: Chain A: K.198, A.260, I.261 Ligands: OLA.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.198 OLA.3: 5 residues within 4Å: Chain A: Y.163, A.217, V.220, D.221, V.244 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.220, A:V.244 Hydrogen bonds: A:D.221, A:D.221 OLA.4: 3 residues within 4Å: Chain A: A.195, K.198 Ligands: OLA.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.198 OLA.7: 6 residues within 4Å: Chain B: I.162, F.165, N.166, Q.242, N.245, W.249 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.162, B:Q.242, B:N.245, B:W.249 Hydrogen bonds: B:Q.242 OLA.8: 4 residues within 4Å: Chain B: G.138, G.142, I.391, F.404 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.391

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.6: 8 residues within 4Å: Chain A: V.364 Chain B: Y.163, A.217, V.220, D.221, V.235, R.236, K.240 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.163, B:D.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, R.L. et al., The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor. Structure (2015)

Release Date

2015-10-21

Peptides

Soluble cytochrome b562,Nociceptin receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,Nociceptin receptor

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