SMTL ID : 5dhh.3 (2 other biounits)

The crystal structure of nociceptin/orphanin FQ peptide receptor (NOP) in complex with SB-612111 (PSI Community Target)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

7 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 5 residues within 4Å: Chain A: Y.163, V.220, D.221, V.244, I.248 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.220, A:V.244, A:I.248 Hydrogen bonds: A:Y.163, A:D.221 OLA.2: 4 residues within 4Å: Chain A: A.195, K.198, T.199 Ligands: OLA.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.195, A:K.198 OLA.3: 6 residues within 4Å: Chain A: V.129, P.179, T.183, L.186, F.189, P.191 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.129, A:T.183, A:L.186, A:P.191 OLA.4: 3 residues within 4Å: Chain A: K.198, I.261 Ligands: OLA.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.261 Salt bridges: A:K.198 OLA.5: 3 residues within 4Å: Chain A: F.165, Q.242, W.249 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.242, A:W.249 Hydrogen bonds: A:Q.242 OLA.7: 2 residues within 4Å: Chain B: P.191, F.192 No protein-ligand interaction detected (PLIP) OLA.8: 2 residues within 4Å: Chain A: R.314 Chain B: K.198 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.314, B:K.198

2 x DGW: (5S,7S)-7-{[4-(2,6-dichlorophenyl)piperidin-1-yl]methyl}-1-methyl-6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ol(Non-covalent)

DGW.6: 16 residues within 4Å: Chain A: Q.181, D.184, I.185, W.190, I.201, D.204, Y.205, C.274, I.293, S.297, V.353, Q.354, V.357, R.376, T.379, Y.383 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.181, A:I.185, A:W.190, A:Y.205, A:I.293 Salt bridges: A:D.204 Halogen bonds: A:V.353 DGW.9: 12 residues within 4Å: Chain B: Q.181, I.201, D.204, Y.205, M.208, I.293, S.297, W.350, V.353, Q.354, T.379, Y.383 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.181, B:Y.205, B:M.208, B:I.293, B:W.350, B:T.379 Salt bridges: B:D.204

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.10: 9 residues within 4Å: Chain A: A.359, L.362, V.364 Chain B: Y.163, A.217, V.220, D.221, V.235, K.240 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.359, A:L.362 Hydrogen bonds: B:Y.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, R.L. et al., The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor. Structure (2015)

Release Date

2015-10-21

Peptides

Soluble cytochrome b562,Nociceptin receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,Nociceptin receptor

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