SMTL ID : 5dj0.1

Fc Heterodimer Design 11.2 Y349S/K370Y + E357D/S364Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.1: 14 residues within 4Å: Chain A: F.21, F.23, P.24, P.25, K.26, D.29, E.38, T.40, V.42, V.44, D.45, Q.75, N.77, R.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.23, A:K.26, A:K.26, A:D.29, A:E.38, A:E.38, A:K.26 NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.2: 14 residues within 4Å: Chain B: F.34, F.36, P.37, P.38, K.39, D.42, E.51, T.53, V.57, D.58, Q.88, N.90, T.92, R.94 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.36, B:K.39, B:K.39, B:D.42, B:E.51, B:E.51, B:K.39 Water bridges: B:R.94, B:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leaver-Fay, A. et al., Computationally Designed Bispecific Antibodies using Negative State Repertoires. Structure (2016)

Release Date

2016-03-30

Peptides

Ig gamma-1 chain C region: A
Ig gamma-1 chain C region: B
Fc-III peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ig gamma-1 chain C region

Ig gamma-1 chain C region

Fc-III peptide

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