SMTL ID : 5dju.2 (1 other biounit)

Crystal structure of LOV2 (C450A) domain in complex with Zdk3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 21 residues within 4Å: Chain B: V.15, T.17, N.24, N.48, A.49, R.50, L.52, Q.53, V.62, I.65, R.66, I.69, L.79, N.81, N.91, F.93, F.108, I.109, G.110, Q.112 Ligands: CL.3 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:V.15, B:T.17, B:I.69, B:F.93, B:F.108 Hydrogen bonds: B:N.48, B:A.49, B:Q.53, B:R.66, B:N.81, B:N.81, B:N.91, B:Q.112 Water bridges: B:R.50, B:R.50, B:R.59, B:R.59, B:R.66 Salt bridges: B:R.50

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: Q.17, W.21 Chain B: A.4, T.5, T.6, R.9 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: N.24, N.48, I.69 Ligands: FMN.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., LOVTRAP: an optogenetic system for photoinduced protein dissociation. Nat.Methods (2016)

Release Date

2016-07-20

Peptides

Engineered protein, Zdk3 affibody: A
NPH1-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

Engineered protein, Zdk3 affibody

NPH1-2

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