SMTL ID : 5dkx.2 (1 other biounit)

Crystal structure of glucosidase II alpha subunit (Tris-bound from)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-trimer

Ligands

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 11 residues within 4Å: Chain A: D.417, I.418, I.454, W.528, D.530, M.531, R.591, W.604, D.607, F.640, H.665 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.417, A:R.591 Water bridges: A:W.491, A:D.530, A:W.604, A:D.607, A:D.607, A:H.665 TRS.4: 11 residues within 4Å: Chain B: D.417, I.418, I.454, W.528, D.530, M.531, R.591, W.604, D.607, F.640, H.665 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.417, B:R.591 Water bridges: B:W.491, B:D.530, B:W.604, B:D.607, B:D.607, B:H.665 TRS.7: 11 residues within 4Å: Chain C: D.417, I.418, I.454, W.528, D.530, M.531, R.591, W.604, D.607, F.640, H.665 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.417, C:R.591 Water bridges: C:W.491, C:D.530, C:W.604, C:D.607, C:D.607, C:H.665

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: V.68, R.69 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: K.361, K.716, Y.720 Chain B: L.331, G.332 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: V.68, R.69 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: K.361, K.716, Y.720 Chain C: L.331, G.332 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain C: V.68, R.69 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: L.331, G.332 Chain C: K.361, K.716, Y.720 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Sci Rep (2016)

Release Date

2016-01-27

Peptides

Alpha glucosidase-like protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Alpha glucosidase-like protein

Related Entries With Identical Sequence