SMTL ID : 5jqp.1

Crystal structure of ER glucosidase II heterodimeric complex consisting of catalytic subunit and the binding domain of regulatory subunit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 13 residues within 4Å: Chain A: W.389, D.417, I.418, I.454, W.491, W.528, D.530, M.531, R.591, W.604, D.607, F.640, H.665 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.417, A:R.591 Water bridges: A:W.604, A:G.606, A:D.607, A:D.607

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain B: Q.58, D.61, S.63, D.65, D.71, E.72 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:Q.58, B:D.61, B:S.63, B:D.65, B:D.71, B:E.72 CA.3: 6 residues within 4Å: Chain B: Y.123, D.126, V.128, D.130, D.139, E.140 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:Y.123, B:D.126, B:V.128, B:D.130, B:D.139, B:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Interaction mode between catalytic and regulatory subunits in glucosidase II involved in ER glycoprotein quality control. Protein Sci. (2016)

Release Date

2016-09-14

Peptides

Alpha glucosidase-like protein: A
Glucosidase 2 subunit beta-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha glucosidase-like protein

Glucosidase 2 subunit beta-like protein

Related Entries With Identical Sequence