SMTL ID : 5dnk.1

The structure of PKMT1 from Rickettsia prowazekii in complex with AdoHcy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 14 residues within 4Å: Chain A: Y.49, G.80, A.82, D.103, L.104, S.105, C.129, S.130, I.131, H.147, G.148, V.149, V.153, V.157 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.82 Hydrogen bonds: A:G.80, A:L.104, A:S.105, A:S.130, A:I.131 Water bridges: A:S.46, A:S.130, A:H.147 SAH.2: 14 residues within 4Å: Chain B: Y.49, G.80, A.82, D.103, L.104, S.105, C.129, S.130, I.131, H.147, G.148, V.149, V.153, V.157 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.82 Hydrogen bonds: B:Y.49, B:G.80, B:L.104, B:S.105, B:S.130, B:I.131, B:H.147 Water bridges: B:H.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abeykoon, A.H. et al., Structural Insights into Substrate Recognition and Catalysis in Outer Membrane Protein B (OmpB) by Protein-lysine Methyltransferases from Rickettsia. J.Biol.Chem. (2016)

Release Date

2016-08-10

Peptides

protein lysine methyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protein lysine methyltransferase 1

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