SMTL ID : 5dpd.1

The structure of PKMT1 from Rickettsia prowazekii in complex with AdoMet

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 15 residues within 4Å: Chain A: Y.49, E.78, G.80, C.81, D.103, L.104, S.105, Q.108, S.130, I.131, H.147, G.148, V.149, V.153, V.157 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.104, A:S.105, A:Q.108, A:S.130, A:I.131, A:H.147 SAM.2: 15 residues within 4Å: Chain B: Y.49, G.80, D.103, L.104, S.105, Q.108, C.129, S.130, I.131, H.147, G.148, V.149, W.152, V.153, V.157 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.49, B:G.80, B:L.104, B:S.105, B:Q.108, B:I.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abeykoon, A.H. et al., Structural Insights into Substrate Recognition and Catalysis in Outer Membrane Protein B (OmpB) by Protein-lysine Methyltransferases from Rickettsia. J.Biol.Chem. (2016)

Release Date

2016-08-10

Peptides

protein lysine methyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protein lysine methyltransferase 1

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