- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x L3B: 5-(2-methylphenyl)-3H-1,2,4-triazole-3-thione(Non-covalent)
L3B.3: 16 residues within 4Å:- Chain A: Y.11, H.84, H.86, A.87, D.88, H.89, D.121, F.124, I.128, H.160, S.185, P.189, Y.191, H.225
- Ligands: ZN.1, ZN.2
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:H.86, A:F.124, A:F.124, A:I.128, A:I.128, A:P.189, A:Y.191
- pi-Stacking: A:H.86, A:F.124
L3B.9: 16 residues within 4Å:- Chain B: Y.11, H.84, H.86, A.87, D.88, H.89, D.121, F.124, I.128, H.160, S.185, P.189, Y.191, H.225
- Ligands: ZN.7, ZN.8
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:H.86, B:F.124, B:F.124, B:I.128, B:I.128, B:P.189, B:Y.191
- Hydrogen bonds: B:Y.11
- pi-Stacking: B:H.86
L3B.13: 16 residues within 4Å:- Chain C: Y.11, H.84, H.86, A.87, D.88, H.89, D.121, F.124, I.128, H.160, S.185, P.189, Y.191, H.225
- Ligands: ZN.11, ZN.12
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:H.86, C:F.124, C:F.124, C:I.128, C:I.128, C:P.189, C:Y.191
- pi-Stacking: C:H.86, C:F.124
L3B.19: 16 residues within 4Å:- Chain D: Y.11, H.84, H.86, A.87, D.88, H.89, D.121, F.124, I.128, H.160, S.185, P.189, Y.191, H.225
- Ligands: ZN.17, ZN.18
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:H.86, D:F.124, D:F.124, D:I.128, D:I.128, D:P.189, D:Y.191
- Hydrogen bonds: D:Y.11
- pi-Stacking: D:H.86
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 6 residues within 4Å:- Chain A: R.173, A.237, R.238, A.239, G.240, A.241
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.173, A:A.237, A:G.240, A:A.241
- Water bridges: A:A.239, A:A.239
SO4.5: 4 residues within 4Å:- Chain A: R.137, V.144, I.145, T.146
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.146, A:T.146, A:T.146
- Water bridges: A:R.137, A:R.137
- Salt bridges: A:R.137
SO4.6: 2 residues within 4Å:- Chain A: W.31, R.70
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.70
SO4.10: 4 residues within 4Å:- Chain B: R.137, V.144, I.145, T.146
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.146
- Water bridges: B:R.137, B:R.137, B:T.146
- Salt bridges: B:R.137
SO4.14: 6 residues within 4Å:- Chain C: R.173, A.237, R.238, A.239, G.240, A.241
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.173, C:A.237, C:G.240, C:A.241
- Water bridges: C:A.239, C:A.239
SO4.15: 4 residues within 4Å:- Chain C: R.137, V.144, I.145, T.146
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.146, C:T.146, C:T.146
- Water bridges: C:R.137, C:R.137
- Salt bridges: C:R.137
SO4.16: 2 residues within 4Å:- Chain C: W.31, R.70
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.70
SO4.20: 4 residues within 4Å:- Chain D: R.137, V.144, I.145, T.146
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.146
- Water bridges: D:R.137, D:R.137, D:T.146
- Salt bridges: D:R.137
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sevaille, L. et al., 1,2,4-Triazole-3-thione Compounds as Inhibitors of Dizinc Metallo-beta-lactamases. ChemMedChem (2017)
- Release Date
- 2017-01-11
- Peptides
- Metallo-beta-lactamase L1 type 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x L3B: 5-(2-methylphenyl)-3H-1,2,4-triazole-3-thione(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sevaille, L. et al., 1,2,4-Triazole-3-thione Compounds as Inhibitors of Dizinc Metallo-beta-lactamases. ChemMedChem (2017)
- Release Date
- 2017-01-11
- Peptides
- Metallo-beta-lactamase L1 type 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B