SMTL ID : 5dvi.1 (1 other biounit)

High resolution crystal Structure of glucose complexed periplasmic glucose binding protein (ppGBP) from P. putida CSV86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 14 residues within 4Å: Chain A: W.33, W.34, E.39, G.65, G.66, Q.88, K.90, H.141, W.248, W.268, N.299, D.301, K.337, H.377 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.39, A:G.66, A:Q.88, A:K.90, A:W.248, A:N.299, A:D.301, A:D.301, A:K.337, A:K.337 Salt bridges: A:K.90, A:H.377

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.64, G.65, Q.187, D.247, N.249 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.65, A:Q.187, A:N.249 Water bridges: A:G.64, A:G.65, A:D.247, A:D.247, A:W.248 GOL.3: 3 residues within 4Å: Chain A: T.104, E.105, K.307 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.104, A:T.104, A:E.105 Water bridges: A:T.104, A:K.307, A:K.307

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: L.119, P.120, R.121, Q.344 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.121, A:Q.344 Water bridges: A:Q.122, A:Q.344, A:Q.344 SO4.5: 1 residues within 4Å: Chain A: T.72 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.72, A:T.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, S. et al., High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity. J.Biol.Chem. (2016)

Release Date

2016-02-24

Peptides

Binding protein component of ABC sugar transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Binding protein component of ABC sugar transporter

Related Entries With Identical Sequence