SMTL ID : 5dwq.1 (1 other biounit)

Crystal structure of CARM1, sinefungin, and methylated H3 peptide (R17)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-oligomer

Ligands

2 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 22 residues within 4Å: Chain A: F.7, Y.19, F.20, Y.23, Q.29, M.32, R.38, G.62, C.63, G.64, I.67, L.68, E.84, A.85, S.86, G.110, K.111, V.112, E.113, E.127, M.138, S.141 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.29, A:G.62, A:A.85, A:V.112, A:E.113, A:E.127, A:S.141 Water bridges: A:G.66, A:G.66 Salt bridges: A:R.38 pi-Stacking: A:F.20 SFG.3: 22 residues within 4Å: Chain B: Y.19, F.20, Y.23, Q.29, M.32, R.38, G.62, C.63, G.64, I.67, L.68, E.84, A.85, S.86, G.110, K.111, V.112, E.113, E.127, M.138, S.141 Chain C: R.6 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.19, B:Q.29, B:G.62, B:A.85, B:V.112, B:E.113, B:E.127, B:S.141 Water bridges: B:R.10 Salt bridges: B:R.38 pi-Stacking: B:F.20

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.262, W.273 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: Q.21 Chain B: Q.18, R.315, K.340 Chain C: G.2, K.3 7 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 3 interactions with chain C Hydrogen bonds: A:Q.21, A:Q.21 Salt bridges: B:R.315, B:K.340, C:K.3 Water bridges: C:G.2, C:G.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boriack-Sjodin, P.A. et al., Structural Insights into Ternary Complex Formation of Human CARM1 with Various Substrates. Acs Chem.Biol. (2016)

Release Date

2015-11-25

Peptides

Histone-arginine methyltransferase CARM1: AB
methylated H3 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Histone-arginine methyltransferase CARM1

methylated H3 peptide

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