SMTL ID : 6arj.1 (1 other biounit)

Crystal structure of CARM1 with EPZ022302 and SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: F.7, Y.19, F.20, Y.23, Q.29, M.32, R.38, G.62, C.63, G.64, I.67, L.68, E.84, A.85, S.86, G.110, K.111, V.112, E.113, E.127, M.138, S.141 Ligands: BW4.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.19, A:Q.29, A:G.62, A:G.64, A:A.85, A:V.112, A:E.113, A:S.141 Water bridges: A:R.10, A:E.127 Salt bridges: A:R.38 pi-Stacking: A:F.20 SAH.4: 23 residues within 4Å: Chain B: F.7, Y.19, F.20, Y.23, Q.29, M.32, R.38, G.62, C.63, G.64, I.67, L.68, E.84, A.85, S.86, G.110, K.111, V.112, E.113, E.127, M.138, S.141 Ligands: BW4.5 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.29, B:G.62, B:G.64, B:A.85, B:V.112, B:E.113, B:S.141 Water bridges: B:R.10, B:Q.29, B:G.66, B:E.127 Salt bridges: B:R.38 pi-Stacking: B:F.20

2 x BW4: methyl 2-[2-{2-chloro-5-[(2R)-2-hydroxy-3-(methylamino)propoxy]phenyl}-6-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methylpyrimidin-4-yl]-2,7-diazaspiro[3.5]nonane-7-carboxylate(Non-covalent)

BW4.2: 19 residues within 4Å: Chain A: Y.19, F.22, Y.23, M.32, E.127, P.128, M.129, Y.131, N.135, E.136, M.138, H.284, W.285, K.340, F.344, Y.346, T.347 Ligands: SAH.1, BW4.5 13 PLIP interactions: 1 interactions with chain B, 12 interactions with chain A Water bridges: B:T.347 Hydrophobic interactions: A:F.22, A:F.22, A:F.22, A:Y.23, A:Y.131, A:Y.131, A:E.136, A:W.285, A:F.344 Hydrogen bonds: A:Y.23, A:E.136, A:H.284 BW4.5: 19 residues within 4Å: Chain B: Y.19, F.22, Y.23, M.32, E.127, P.128, M.129, Y.131, N.135, E.136, M.138, H.284, W.285, K.340, F.344, Y.346, T.347 Ligands: BW4.2, SAH.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.22, B:F.22, B:F.22, B:Y.23, B:Y.131, B:Y.131, B:E.136, B:W.285, B:F.344 Hydrogen bonds: B:E.136, B:H.284 Water bridges: B:Y.346, B:T.347

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: D.262, W.273, S.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.262 Water bridges: A:D.161, A:D.262, A:E.280 GOL.6: 3 residues within 4Å: Chain B: D.262, W.273, S.275 2 PLIP interactions: 2 interactions with chain B Water bridges: B:W.273, B:S.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drew, A.E. et al., Identification of a CARM1 Inhibitor with Potent In Vitro and In Vivo Activity in Preclinical Models of Multiple Myeloma. Sci Rep (2017)

Release Date

2018-02-07

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-arginine methyltransferase CARM1

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