SMTL ID : 5e24.3 (2 other biounits)

Structure of the Su(H)-Hairless-DNA Repressor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-functional Binders)

GLC-GLC-GLC-GLC.1: 22 residues within 4Å: Chain A: N.12, D.14, K.15, K.42, E.44, E.45, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, Y.341, R.344 Ligands: EDO.7, EDO.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.42, A:E.44 Water bridges: A:K.42 GLC-GLC-GLC-GLC.2: 21 residues within 4Å: Chain C: N.12, D.14, K.15, K.42, E.44, E.45, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, Y.341, R.344 Ligands: EDO.63 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.42, C:E.44 Water bridges: C:D.41, C:K.42, C:Y.341

113 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: E.22, V.23, K.26, E.288, G.289, A.292 Ligands: EDO.15 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: D.287, E.288, E.291, Y.307, E.310 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: W.158, A.162, K.256, P.257, F.258, G.327, E.328 Ligand excluded by PLIP EDO.6: 9 residues within 4Å: Chain A: H.64, D.95, A.96, Y.176, I.329, M.330, P.331, N.332 Ligands: EDO.36 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: W.62, E.153 Ligands: GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC.1 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: A.83, Q.86, D.87 Ligands: EDO.11 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: E.22, K.295, D.296 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: Y.17, N.18, D.296, K.297 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: Q.86, R.98 Ligands: EDO.8 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: K.42, E.45, K.46, Q.49 Chain F: Q.386 Ligands: EDO.20 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: Y.167, D.180, V.181, Q.365 Ligands: EDO.34 Ligand excluded by PLIP EDO.14: 1 residues within 4Å: Chain A: Q.325 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: K.26, E.288 Ligands: EDO.3 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: P.40, D.41, K.46 Ligands: EDO.20, EDO.37 Ligand excluded by PLIP EDO.17: 8 residues within 4Å: Chain A: K.140, S.145, L.147, M.148, K.202, H.203, M.204, N.205 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: A.77, E.78, K.273, K.277 Ligands: EDO.19 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain A: A.77, E.78, A.268, K.273 Ligands: EDO.18 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: D.41, K.42, K.46 Ligands: EDO.12, EDO.16 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain A: R.98, Y.99, N.100, G.101 Ligands: EDO.36 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain A: L.121, E.138, L.139, K.142 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain A: D.164, G.165, N.185, A.186, G.187 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain A: R.344 Ligands: GLC-GLC-GLC-GLC.1 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain A: D.236, Y.242, R.316 Ligands: EDO.38 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain A: E.28, K.29, G.32 Ligand excluded by PLIP EDO.27: 1 residues within 4Å: Chain A: K.144 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain A: N.294, K.295, P.298, R.316 Ligands: EDO.46 Ligand excluded by PLIP EDO.29: 5 residues within 4Å: Chain A: T.193, V.196, D.197, K.200, V.357 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain A: Y.17, N.18, A.21, V.37, H.39 Ligand excluded by PLIP EDO.31: 7 residues within 4Å: Chain A: P.48, R.66, G.69, Y.70, S.73, L.75 Chain F: E.383 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain A: F.85, K.88, E.281, L.285, T.286, L.304 Ligand excluded by PLIP EDO.33: 2 residues within 4Å: Chain A: E.130 Ligands: EDO.47 Ligand excluded by PLIP EDO.34: 5 residues within 4Å: Chain A: Y.167, V.181, G.182, N.185 Ligands: EDO.13 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain A: Q.49, V.50, T.53 Chain F: R.9, V.365, E.366 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain A: R.98, Y.99, N.332, I.333 Ligands: EDO.6, EDO.21 Ligand excluded by PLIP EDO.37: 4 residues within 4Å: Chain A: E.38, H.39, P.40 Ligands: EDO.16 Ligand excluded by PLIP EDO.38: 6 residues within 4Å: Chain A: G.243, V.244, P.315, R.316 Ligands: EDO.25, EDO.48 Ligand excluded by PLIP EDO.39: 3 residues within 4Å: Chain A: K.277, N.282 Ligands: EDO.50 Ligand excluded by PLIP EDO.40: 5 residues within 4Å: Chain A: S.270, P.271, N.272, K.273, E.274 Ligand excluded by PLIP EDO.41: 3 residues within 4Å: Chain A: P.81, A.82, A.83 Ligand excluded by PLIP EDO.42: 5 residues within 4Å: Chain A: A.268, A.269, S.270, P.271, K.273 Ligand excluded by PLIP EDO.43: 5 residues within 4Å: Chain A: A.71, L.76, E.78, K.102, I.104 Ligand excluded by PLIP EDO.44: 2 residues within 4Å: Chain A: A.215, K.219 Ligand excluded by PLIP EDO.45: 7 residues within 4Å: Chain A: V.196, I.199, K.200, A.350, A.351, S.352, G.353 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain A: N.294, K.295, Y.307, L.311 Ligands: EDO.28 Ligand excluded by PLIP EDO.47: 3 residues within 4Å: Chain A: E.130, E.131 Ligands: EDO.33 Ligand excluded by PLIP EDO.48: 6 residues within 4Å: Chain A: V.244, T.245, V.246, A.319, E.322 Ligands: EDO.38 Ligand excluded by PLIP EDO.49: 3 residues within 4Å: Chain A: K.200, N.201, K.202 Ligand excluded by PLIP EDO.50: 4 residues within 4Å: Chain A: E.274, L.275, E.278 Ligands: EDO.39 Ligand excluded by PLIP EDO.51: 5 residues within 4Å: Chain C: K.15, Y.17, N.18, D.296, K.297 Ligand excluded by PLIP EDO.52: 3 residues within 4Å: Chain C: S.211, I.212, A.215 Ligand excluded by PLIP EDO.53: 7 residues within 4Å: Chain C: K.15, G.16, W.230, V.293, K.297, P.298, L.299 Ligand excluded by PLIP EDO.54: 8 residues within 4Å: Chain C: K.42, E.45, K.46, Q.49 Chain E: R.9, E.13, D.364, Q.386 Ligand excluded by PLIP EDO.55: 6 residues within 4Å: Chain C: L.121, L.122, L.135, E.138, L.139, K.142 Ligand excluded by PLIP EDO.56: 5 residues within 4Å: Chain C: P.271, N.272, K.273, E.274, L.275 Ligand excluded by PLIP EDO.57: 6 residues within 4Å: Chain C: D.95, Y.176, I.329, M.330, P.331, N.332 Ligand excluded by PLIP EDO.58: 6 residues within 4Å: Chain C: A.301, E.308, A.312, I.317, A.318, M.321 Ligand excluded by PLIP EDO.59: 4 residues within 4Å: Chain C: T.31, I.33, L.275, E.278 Ligand excluded by PLIP EDO.60: 4 residues within 4Å: Chain C: E.130, E.131, P.133, A.134 Ligand excluded by PLIP EDO.61: 3 residues within 4Å: Chain C: T.128, E.130, E.131 Ligand excluded by PLIP EDO.62: 6 residues within 4Å: Chain C: G.13, D.14, Y.210, E.214, N.234, K.297 Ligand excluded by PLIP EDO.63: 7 residues within 4Å: Chain C: E.44, W.62, E.153 Ligands: GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC.2 Ligand excluded by PLIP EDO.64: 4 residues within 4Å: Chain C: R.354, Q.355, T.356, E.359 Ligand excluded by PLIP EDO.65: 4 residues within 4Å: Chain D: F.12, I.13, V.30, T.31 Ligand excluded by PLIP EDO.66: 3 residues within 4Å: Chain D: K.8, D.9, K.11 Ligand excluded by PLIP EDO.67: 7 residues within 4Å: Chain E: F.387, E.390, V.394, P.397, T.398, T.419, Y.420 Ligand excluded by PLIP EDO.68: 8 residues within 4Å: Chain E: L.51, W.56, L.75, L.93, N.94, G.95, K.96 Ligands: EDO.76 Ligand excluded by PLIP EDO.69: 5 residues within 4Å: Chain E: V.23, F.52, K.311, E.313, Q.315 Ligand excluded by PLIP EDO.70: 6 residues within 4Å: Chain E: V.25, Y.50, F.52, V.230, K.311 Ligands: EDO.83 Ligand excluded by PLIP EDO.71: 6 residues within 4Å: Chain E: K.135, K.311, A.312, E.313, Y.314, I.332 Ligand excluded by PLIP EDO.72: 3 residues within 4Å: Chain E: Q.386, F.387, E.390 Ligand excluded by PLIP EDO.73: 3 residues within 4Å: Chain E: T.8, R.9, D.10 Ligand excluded by PLIP EDO.74: 5 residues within 4Å: Chain E: W.391, L.392, P.397, T.421, P.422 Ligand excluded by PLIP EDO.75: 3 residues within 4Å: Chain E: M.16, R.19, P.401 Ligand excluded by PLIP EDO.76: 7 residues within 4Å: Chain E: L.51, F.52, G.53, W.56, T.57, Q.97 Ligands: EDO.68 Ligand excluded by PLIP EDO.77: 5 residues within 4Å: Chain E: C.76, F.78, Q.90, F.122 Ligands: EDO.79 Ligand excluded by PLIP EDO.78: 6 residues within 4Å: Chain E: P.236, R.237, M.266, K.267, T.269, Q.283 Ligand excluded by PLIP EDO.79: 5 residues within 4Å: Chain E: F.78, M.88, K.120, F.122 Ligands: EDO.77 Ligand excluded by PLIP EDO.80: 6 residues within 4Å: Chain E: K.30, V.31, D.154, C.156, Q.258, S.308 Ligand excluded by PLIP EDO.81: 5 residues within 4Å: Chain E: A.158, S.159, D.215, G.216, Y.217 Ligand excluded by PLIP EDO.82: 4 residues within 4Å: Chain E: V.131, P.326, T.328, P.329 Ligand excluded by PLIP EDO.83: 9 residues within 4Å: Chain E: L.27, Y.50, H.180, Q.192, W.193, G.194, A.195, V.230 Ligands: EDO.70 Ligand excluded by PLIP EDO.84: 8 residues within 4Å: Chain E: Q.33, R.41, F.42, C.44, F.166, R.168, L.259 Chain H: G.8 Ligand excluded by PLIP EDO.85: 2 residues within 4Å: Chain E: S.208, E.209 Ligand excluded by PLIP EDO.86: 9 residues within 4Å: Chain E: F.166, N.167, R.168, K.261, D.300, C.303, W.304, T.305 Ligands: EDO.90 Ligand excluded by PLIP EDO.87: 6 residues within 4Å: Chain E: E.313, Y.314, Q.315, A.413, T.414, G.415 Ligand excluded by PLIP EDO.88: 4 residues within 4Å: Chain E: N.38, E.39, K.40, F.105 Ligand excluded by PLIP EDO.89: 7 residues within 4Å: Chain E: C.48, Y.50, Y.98, A.100, T.191, Q.192, W.193 Ligand excluded by PLIP EDO.90: 6 residues within 4Å: Chain E: N.167, Q.246, K.261, D.300, C.303 Ligands: EDO.86 Ligand excluded by PLIP EDO.91: 4 residues within 4Å: Chain F: F.78, M.88, K.120, F.122 Ligand excluded by PLIP EDO.92: 7 residues within 4Å: Chain F: F.387, E.390, V.394, P.397, T.398, T.419, Y.420 Ligand excluded by PLIP EDO.93: 4 residues within 4Å: Chain F: V.25, F.52, K.311, E.313 Ligand excluded by PLIP EDO.94: 7 residues within 4Å: Chain F: L.51, F.52, G.53, W.56, T.57, Q.97 Ligands: EDO.111 Ligand excluded by PLIP EDO.95: 5 residues within 4Å: Chain F: W.56, Y.60, L.75, N.94, G.95 Ligand excluded by PLIP EDO.96: 3 residues within 4Å: Chain F: P.397, T.421, P.422 Ligand excluded by PLIP EDO.97: 7 residues within 4Å: Chain F: V.131, F.132, N.133, Y.314, T.328, P.329, V.330 Ligand excluded by PLIP EDO.98: 5 residues within 4Å: Chain F: E.390, L.392, V.394, R.395, P.397 Ligand excluded by PLIP EDO.99: 8 residues within 4Å: Chain F: K.6, H.357, Q.359, W.361, E.366, V.405, R.406, N.407 Ligand excluded by PLIP EDO.100: 8 residues within 4Å: Chain F: H.28, A.29, V.31, A.32, F.43, P.45, P.47, I.137 Ligand excluded by PLIP EDO.101: 9 residues within 4Å: Chain F: Y.15, R.19, P.401, I.402, S.403, A.413, T.414, G.415, L.416 Ligand excluded by PLIP EDO.102: 3 residues within 4Å: Chain F: Q.386, F.387, E.390 Ligand excluded by PLIP EDO.103: 5 residues within 4Å: Chain E: G.67 Chain F: L.64, G.67, E.68, G.69 Ligand excluded by PLIP EDO.104: 5 residues within 4Å: Chain F: K.135, A.312, E.313, Y.314, I.332 Ligand excluded by PLIP EDO.105: 6 residues within 4Å: Chain F: P.329, N.353, F.354, T.355, T.374 Ligands: EDO.106 Ligand excluded by PLIP EDO.106: 7 residues within 4Å: Chain F: P.329, P.331, N.353, T.355, R.406, Y.412 Ligands: EDO.105 Ligand excluded by PLIP EDO.107: 4 residues within 4Å: Chain F: R.168, L.169, R.170, D.300 Ligand excluded by PLIP EDO.108: 6 residues within 4Å: Chain F: R.177, A.188, S.189, S.190, T.191, E.279 Ligand excluded by PLIP EDO.109: 4 residues within 4Å: Chain A: R.354 Chain F: W.393, V.394, R.395 Ligand excluded by PLIP EDO.110: 2 residues within 4Å: Chain F: R.395, Q.396 Ligand excluded by PLIP EDO.111: 4 residues within 4Å: Chain F: F.52, G.53, S.54 Ligands: EDO.94 Ligand excluded by PLIP EDO.112: 3 residues within 4Å: Chain F: Y.98, C.99, A.100 Ligand excluded by PLIP EDO.113: 7 residues within 4Å: Chain F: M.22, R.59, Y.123, H.127, I.129, F.316, E.318 Ligand excluded by PLIP EDO.114: 7 residues within 4Å: Chain B: R.18, W.27 Chain F: V.381, P.382, E.383, I.384, S.385 Ligand excluded by PLIP EDO.115: 3 residues within 4Å: Chain F: K.135, K.311, E.313 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Z. et al., Structure and Function of the Su(H)-Hairless Repressor Complex, the Major Antagonist of Notch Signaling in Drosophila melanogaster. Plos Biol. (2016)

Release Date

2016-06-15

Peptides

Maltose-binding periplasmic protein: AC
Protein hairless: BD
Suppressor of hairless protein: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

F
F

Maltose-binding periplasmic protein

Protein hairless

Suppressor of hairless protein

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