SMTL ID : 5e4b.1

Hydroxynitrile lyase from the fern Davallia tyermanii in complex with (R)-mandelonitrile / benzaldehyde

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x HBX: benzaldehyde(Non-covalent)

HBX.1: 9 residues within 4Å: Chain A: V.69, V.77, F.96, Y.126, I.133, F.136, Y.142, L.185 Ligands: MXN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.69, A:V.77, A:F.96, A:I.133, A:L.185 Hydrogen bonds: A:Y.126, A:Y.142 HBX.3: 9 residues within 4Å: Chain B: V.77, F.96, Y.126, I.133, F.136, Y.142, L.185, Y.186 Ligands: MXN.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.77, B:F.96, B:I.133, B:L.185 pi-Stacking: B:F.136

2 x MXN: (2R)-hydroxy(phenyl)ethanenitrile(Non-covalent)

MXN.2: 12 residues within 4Å: Chain A: V.69, V.77, R.94, F.96, D.110, S.112, Y.126, I.128, I.133, Y.142, L.185 Ligands: HBX.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.69, A:V.77, A:F.96, A:I.133, A:L.185, A:L.185 Hydrogen bonds: A:R.94, A:S.112, A:Y.126, A:Y.142 MXN.4: 12 residues within 4Å: Chain B: V.77, R.94, F.96, D.110, S.112, Y.126, I.128, I.133, F.136, Y.142, L.185 Ligands: HBX.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.77, B:F.96, B:I.133, B:L.185 Hydrogen bonds: B:R.94, B:S.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lanfranchi, E. et al., Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily. Sci Rep (2017)

Release Date

2016-10-05

Peptides

Hydroxynitrile lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydroxynitrile lyase

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