SMTL ID : 5e4d.1

Hydroxynitrile lyase from the fern Davallia tyermanii in complex with benzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

4 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 10 residues within 4Å: Chain A: V.73, V.77, F.96, Y.126, I.133, F.136, Y.142, W.163, L.185, Y.186 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.73, A:V.77, A:F.96, A:I.133, A:F.136, A:L.185 Hydrogen bonds: A:Y.126, A:Y.142 Water bridges: A:R.94, A:R.94 BEZ.2: 7 residues within 4Å: Chain B: F.96, Y.126, I.128, I.133, F.136, Y.142, L.185 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.96, B:I.133, B:F.136, B:L.185, B:L.185 Hydrogen bonds: B:D.110 Water bridges: B:R.94 BEZ.3: 7 residues within 4Å: Chain A: V.143, T.166 Chain B: R.39, L.42, M.125, V.143, T.166 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.143, B:L.42, B:V.143 Salt bridges: B:R.39 BEZ.4: 4 residues within 4Å: Chain B: V.76, A.101, I.133, T.134 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.76, B:A.101, B:I.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lanfranchi, E. et al., Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily. Sci Rep (2017)

Release Date

2016-10-12

Peptides

Hydroxynitrile lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydroxynitrile lyase

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