SMTL ID : 5e4l.2 (1 other biounit)

Structure of ligand binding region of uPARAP at pH 5.3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.418, Q.422, N.445, E.451, D.452 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.418, A:D.418 CA.2: 6 residues within 4Å: Chain A: E.442, N.444, F.446, E.451, N.464, D.465 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.451, A:D.465 CA.3: 3 residues within 4Å: Chain A: Q.298, E.305, N.320 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.305

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.41, S.43, L.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.43, A:S.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, C. et al., Crystal structures of uPARAP, a member of mannose receptor family. to be published

Release Date

2016-10-12

Peptides

C-type mannose receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C-type mannose receptor 2

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