SMTL ID : 5e5u.1 (1 other biounit)

Crystal structure of the complex between Carbonic anhydrase-like domain of PTPRG and Immunoglobulin domains 2-3 of CNTN6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)

1PS.1: 4 residues within 4Å: Chain A: W.60, E.174, T.175, F.176 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.176 Hydrogen bonds: A:E.174 Water bridges: A:F.176 pi-Stacking: A:W.60, A:W.60 1PS.2: 2 residues within 4Å: Chain A: H.35, H.36 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.35 Salt bridges: A:H.36 pi-Stacking: A:H.35

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: Q.237, D.238, H.239, V.240 Chain B: S.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.239, A:V.240 FMT.4: 2 residues within 4Å: Chain A: S.230 Ligands: MLT.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.230 FMT.7: 6 residues within 4Å: Chain B: V.49, Q.50, D.52, R.55, F.56, K.160 4 PLIP interactions: 4 interactions with chain B Water bridges: B:D.52, B:D.52, B:V.57, B:K.160

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.5: 7 residues within 4Å: Chain A: S.7, G.8, A.9, G.11, P.12, E.13, H.14 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.13 Hydrogen bonds: A:G.8, A:E.13, A:E.13

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 4 residues within 4Å: Chain B: F.42, L.47, Y.48, R.55 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.42 Hydrogen bonds: B:Y.48 Salt bridges: B:R.55

1 x MLT: D-MALATE(Non-covalent)

MLT.8: 2 residues within 4Å: Chain B: R.186 Ligands: FMT.4 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.186, A:K.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nikolaienko, R.M. et al., Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues. J.Biol.Chem. (2016)

Release Date

2016-08-31

Peptides

Receptor-type tyrosine-protein phosphatase gamma: A
Contactin-6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-type tyrosine-protein phosphatase gamma

Contactin-6

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