SMTL ID : 5e5u.2 (1 other biounit)

Crystal structure of the complex between Carbonic anhydrase-like domain of PTPRG and Immunoglobulin domains 2-3 of CNTN6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)

1PS.1: 4 residues within 4Å: Chain A: W.60, E.174, T.175, F.176 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.176 Water bridges: A:T.175 pi-Stacking: A:W.60, A:W.60 1PS.2: 5 residues within 4Å: Chain A: P.2, Y.3, Y.10, Q.236, Q.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.10 Hydrogen bonds: A:Y.3 Water bridges: A:S.18

3 x MLT: D-MALATE(Non-covalent)

MLT.3: 4 residues within 4Å: Chain A: V.109, N.110, R.112, R.215 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.110, A:R.215, A:R.215 Salt bridges: A:R.112, A:R.215 MLT.4: 6 residues within 4Å: Chain B: E.51, Y.158, S.159, K.160, S.161, Q.162 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.161, B:Q.162 MLT.6: 6 residues within 4Å: Chain A: H.239 Chain B: F.7, E.8, T.9, R.12, G.28 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.8, B:T.9, B:T.9, B:R.12, B:R.12, B:G.28, A:H.239 Salt bridges: B:R.12, A:H.239

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 7 residues within 4Å: Chain B: Y.38, L.47, V.49, Q.50, V.57, Q.59, K.160 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.49, B:Q.50 Water bridges: B:K.160 Salt bridges: B:K.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nikolaienko, R.M. et al., Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues. J.Biol.Chem. (2016)

Release Date

2016-08-31

Peptides

Receptor-type tyrosine-protein phosphatase gamma: A
Contactin-6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Receptor-type tyrosine-protein phosphatase gamma

Contactin-6

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