- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 6 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 8 residues within 4Å:- Chain A: N.10, E.11, S.12, M.26
- Chain B: G.19, G.20, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 13 residues within 4Å:- Chain B: Q.55, L.56, D.59, N.107, N.111
- Chain E: S.17, G.18, F.19, N.22, Q.422, G.424, T.425
- Chain F: S.102
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:S.17, E:S.17, E:N.22, E:Q.422, B:D.59
- Water bridges: E:G.424
NAG-NAG.9: 8 residues within 4Å:- Chain C: N.10, E.11, S.12, M.26
- Chain D: G.19, G.20, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 13 residues within 4Å:- Chain A: S.17, G.18, F.19, N.22, Q.422, G.424, T.425
- Chain B: S.102
- Chain D: Q.55, L.56, D.59, N.107, N.111
6 PLIP interactions:1 interactions with chain D, 5 interactions with chain A- Hydrogen bonds: D:D.59, A:S.17, A:S.17, A:N.22, A:Q.422
- Water bridges: A:G.424
NAG-NAG.15: 8 residues within 4Å:- Chain E: N.10, E.11, S.12, M.26
- Chain F: G.19, G.20, A.22, G.23
No protein-ligand interaction detected (PLIP)NAG-NAG.17: 13 residues within 4Å:- Chain C: S.17, G.18, F.19, N.22, Q.422, G.424, T.425
- Chain D: S.102
- Chain F: Q.55, L.56, D.59, N.107, N.111
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:S.17, C:S.17, C:N.22, C:Q.422, F:D.59
- Water bridges: C:G.424
- 3 x GAL- 5N6: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
GAL-5N6.4: 11 residues within 4Å:- Chain A: F.125, G.168, T.169, A.170, S.171, W.183, A.185, Y.229, F.238, V.273, F.295
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.125, A:A.185, A:F.295
- Hydrogen bonds: A:T.169, A:T.169, A:S.171, A:Y.229
GAL-5N6.10: 11 residues within 4Å:- Chain C: F.125, G.168, T.169, A.170, S.171, W.183, A.185, Y.229, F.238, V.273, F.295
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.125, C:A.185, C:F.295
- Hydrogen bonds: C:T.169, C:T.169, C:S.171
GAL-5N6.16: 11 residues within 4Å:- Chain E: F.125, G.168, T.169, A.170, S.171, W.183, A.185, Y.229, F.238, V.273, F.295
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:F.125, E:A.185, E:F.295
- Hydrogen bonds: E:T.169, E:T.169, E:S.171, E:Y.229
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 3 residues within 4Å:- Chain B: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.58, B:N.61, B:E.65
NAG.12: 3 residues within 4Å:- Chain D: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.58, D:N.61, D:E.65
NAG.18: 3 residues within 4Å:- Chain F: N.58, N.61, E.65
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.58, F:N.61, F:E.65
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism. PLoS Pathog. (2016)
- Release Date
- 2016-03-23
- Peptides
- Hemagglutinin-esterase: ACE
Hemagglutinin-esterase: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 6 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x GAL- 5N6: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism. PLoS Pathog. (2016)
- Release Date
- 2016-03-23
- Peptides
- Hemagglutinin-esterase: ACE
Hemagglutinin-esterase: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B