SMTL ID : 5ec9.1

Retinoic acid receptor alpha in complex with chiral dihydrobenzofuran benzoic acid 9a and a fragment of the coactivator TIF2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 5LO: 4-[(11S,15R)-4,4,7,7-Tetramethyl-16-oxatetracyclo[8.6.0.03,8.011,15]hexadeca-1(10),2,8-trien-11-yl]benzoic acid(Non-covalent)

5LO.1: 21 residues within 4Å: Chain A: I.22, A.25, A.26, Q.29, W.59, N.60, L.63, I.64, F.67, R.70, I.78, L.80, A.81, V.96, I.99, F.100, V.103, C.186, H.189, L.190, F.193 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.22, A:I.22, A:I.22, A:A.26, A:W.59, A:I.64, A:F.67, A:F.67, A:I.78, A:V.96, A:I.99, A:V.103, A:H.189, A:L.190 Hydrogen bonds: A:A.81 Water bridges: A:F.67 Salt bridges: A:R.70 5LO.2: 21 residues within 4Å: Chain C: I.22, A.25, A.26, Q.29, W.59, N.60, L.63, I.64, F.67, R.70, I.78, L.80, A.81, V.96, I.99, F.100, V.103, C.186, H.189, L.190, F.193 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:I.22, C:I.22, C:I.22, C:A.26, C:W.59, C:I.64, C:F.67, C:F.67, C:I.78, C:V.96, C:I.99, C:V.103, C:H.189, C:L.190 Hydrogen bonds: C:A.81 Water bridges: C:F.67 Salt bridges: C:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sunden, H. et al., Chiral Dihydrobenzofuran Acids Show Potent Retinoid X Receptor-Nuclear Receptor Related 1 Protein Dimer Activation. J.Med.Chem. (2016)

Release Date

2016-03-09

Peptides

Retinoic acid receptor RXR-alpha: AC
LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP

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