SMTL ID : 3oap.1

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 9-cis retinoic acid and the coactivator peptide GRIP-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.1: 14 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, L.82, F.86, R.89, L.99, A.100, V.115, I.118, C.205, H.208, L.209 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.41, A:I.41, A:A.45, A:Q.48, A:L.82, A:F.86, A:F.86, A:F.86, A:L.99, A:V.115, A:H.208, A:L.209, A:L.209 Hydrogen bonds: A:A.100 Water bridges: A:F.86 Salt bridges: A:R.89 9CR.2: 14 residues within 4Å: Chain C: I.41, A.44, A.45, Q.48, L.82, F.86, R.89, L.99, A.100, V.115, I.118, C.205, H.208, L.209 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:I.41, C:I.41, C:A.45, C:Q.48, C:L.82, C:F.86, C:F.86, C:F.86, C:L.99, C:V.115, C:H.208, C:L.209, C:L.209 Hydrogen bonds: C:A.100 Water bridges: C:F.86 Salt bridges: C:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, G. et al., Structure, Energetics and Dynamics of Binding Coactivator Peptide to Human Retinoid X Receptor Alpha Ligand Binding Domain Complex with 9-cis-Retinoic Acid. Biochemistry (2011)

Release Date

2010-11-17

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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